GenoLeWM-FX Borzoi residual model report¶
Generated by tools.research.fx_borzoi_residual at 2026-06-11T14:00:00Z.
Parent epic: #266. Model gate: #271. Final gate: #272.
Decision: residual_lift_candidate.
Final positive claim supported: False.
This report is an experimental residual-model gate only. It is not a final GenoLeWM-FX model-quality result, clinical result, deployment-readiness result, broad VEP superiority claim, broad Carbon comparison, useful-planning claim, ground-truth biology claim, or exact fipip overlap claim.
Reproduce¶
uv run python -m tools.research.fx_borzoi_residual \
--cache-manifest docs/research/fx-borzoi-cache-manifest.json \
--baseline-report docs/research/fx-borzoi-baseline-report.json \
--output-predictions docs/research/fx-borzoi-residual-predictions.parquet \
--output-json docs/research/fx-borzoi-residual-report.json \
--output-md docs/research/fx-borzoi-residual-report.md
Metrics¶
| Model | AUROC | AUPRC | Balanced accuracy |
|---|---|---|---|
| Strongest simple baseline | 0.6494 | 0.2225 | 0.5080 |
| Residual ensemble | 0.6594 | 0.2300 | 0.5026 |
Paired deltas versus strongest simple baseline:
| Metric | Delta | 95% CI |
|---|---|---|
| AUROC | 0.0099 | [-0.0035, 0.0237] |
| AUPRC | 0.0075 | [-0.0029, 0.0198] |
Prediction Artifact¶
| Artifact | Rows | SHA-256 | Size |
|---|---|---|---|
docs/research/fx-borzoi-residual-predictions.parquet |
3390 | sha256:968ba05757c563b1d13dfcdaed0f0df7c9511a570c35f81da62515cc604fb978 |
144460 |
Interpretation¶
The residual model shows a small positive mean lift, but the paired confidence interval crosses zero. This is implementation evidence for #271, not a positive locked-result claim for #272.